JavaDoc Warnings

The following document contains JavaDoc warnings.

Summary

FilesErrors
60171

Files

FilesErrors
edu/yale/csgp/vitapad/EditPane.java 3
edu/yale/csgp/vitapad/GUIUtils.java 4
edu/yale/csgp/vitapad/GraphPanel.java 5
edu/yale/csgp/vitapad/GraphPanelMode.java 6
edu/yale/csgp/vitapad/graph/AbstractGraph.java 1
edu/yale/csgp/vitapad/graph/DataClass.java 1
edu/yale/csgp/vitapad/graph/DecorableElement.java 1
edu/yale/csgp/vitapad/graph/DecorableElementImp.java 3
edu/yale/csgp/vitapad/graph/Decoration.java 4
edu/yale/csgp/vitapad/graph/DecorationListener.java 1
edu/yale/csgp/vitapad/graph/DummyVertex.java 4
edu/yale/csgp/vitapad/graph/Edge.java 3
edu/yale/csgp/vitapad/graph/Experiment.java 6
edu/yale/csgp/vitapad/graph/Graph.java 2
edu/yale/csgp/vitapad/graph/GraphElement.java 1
edu/yale/csgp/vitapad/graph/GraphEvent.java 3
edu/yale/csgp/vitapad/graph/GraphListener.java 1
edu/yale/csgp/vitapad/graph/LabeledElement.java 1
edu/yale/csgp/vitapad/graph/LabeledElementImp.java 1
edu/yale/csgp/vitapad/graph/LinkableElement.java 3
edu/yale/csgp/vitapad/graph/LinkableElementImp.java 3
edu/yale/csgp/vitapad/graph/PathwayDecoration.java 8
edu/yale/csgp/vitapad/graph/PathwayEdge.java 7
edu/yale/csgp/vitapad/graph/PathwayGraph.java 6
edu/yale/csgp/vitapad/graph/PathwayVertex.java 11
edu/yale/csgp/vitapad/graph/TooltipElement.java 3
edu/yale/csgp/vitapad/graph/TooltipElementImp.java 3
edu/yale/csgp/vitapad/graph/VPGradient.java 9
edu/yale/csgp/vitapad/graph/Vertex.java 4
edu/yale/csgp/vitapad/gui/components/AnnotationArea.java 4
edu/yale/csgp/vitapad/gui/components/ExpandableVPRLabel.java 1
edu/yale/csgp/vitapad/gui/components/GradientLabel.java 4
edu/yale/csgp/vitapad/gui/components/TypeButton.java 2
edu/yale/csgp/vitapad/gui/dialogs/CompoundDisplayPanel.java 1
edu/yale/csgp/vitapad/gui/dialogs/EditGradientDialog.java 1
edu/yale/csgp/vitapad/gui/dialogs/EnzymeDisplayPanel.java 1
edu/yale/csgp/vitapad/util/GlassPane.java 1
edu/yale/csgp/vitapad/util/Resources.java 1
edu/yale/csgp/vitapad/util/geom/Geometry.java 1
edu/yale/csgp/vitapad/util/texhyphj/Hyphenator.java 1
edu/yale/csgp/vitapad/util/texhyphj/List.java 2
edu/yale/csgp/vitapad/visual/AbstractLabeledRenderer.java 3
edu/yale/csgp/vitapad/visual/AbstractRenderer.java 5
edu/yale/csgp/vitapad/visual/EdgeRenderer.java 2
edu/yale/csgp/vitapad/visual/LabeledRenderer.java 3
edu/yale/csgp/vitapad/visual/Renderer.java 6
edu/yale/csgp/vitapad/visual/VertexRenderer.java 1
edu/yale/csgp/vitapad/visual/paint/DecorationPainterFactory.java 1
edu/yale/csgp/vitapad/visual/paint/DecorationPainterFactoryImp.java 1
edu/yale/csgp/vitapad/visual/paint/EdgePainter.java 1
edu/yale/csgp/vitapad/visual/paint/EdgePainterFactory.java 1
edu/yale/csgp/vitapad/visual/paint/EdgePainterFactoryImp.java 1
edu/yale/csgp/vitapad/visual/paint/Painter.java 1
edu/yale/csgp/vitapad/visual/paint/PainterFactory.java 1
edu/yale/csgp/vitapad/visual/paint/VertexPainter.java 1
edu/yale/csgp/vitapad/visual/paint/VertexPainterFactory.java 1
edu/yale/csgp/vitapad/visual/paint/VertexPainterFactoryImp.java 1
edu/yale/csgp/vitapad/visual/paint/VertexPainterImp.java 1
edu/yale/csgp/vitapad/visual/type/InvisibleVertex.java 1
edu/yale/csgp/vitapad/visual/type/Type.java 11

edu/yale/csgp/vitapad/EditPane.java

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Tag @see: reference not found: edu.yale.vitapad.MainFrame 40
Tag @see: reference not found: edu.yale.graph.visual.GraphScrollPane 40
Tag @see: reference not found: edu.yale.graph.visual.GraphToolBar 40

edu/yale/csgp/vitapad/GUIUtils.java

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@param argument "component" is not a parameter name. 328
@param argument "actionContext" is not a parameter name. 406
@param argument "value" is not a parameter name. 495
@param argument "def" is not a parameter name. 495

edu/yale/csgp/vitapad/GraphPanel.java

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Tag @see: can't find setViewMode() in edu.yale.csgp.vitapad.GraphPanel 91
Tag @see: can't find setEditMode() in edu.yale.csgp.vitapad.GraphPanel 91
Tag @see: can't find setVertexMode() in edu.yale.csgp.vitapad.GraphPanel 91
Tag @see: can't find setEdgeMode() in edu.yale.csgp.vitapad.GraphPanel 91
@return tag has no arguments. 207

edu/yale/csgp/vitapad/GraphPanelMode.java

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Tag @see: reference not found: edu.yale.graph.visual.GraphPanelEdgeMode 29
Tag @see: reference not found: edu.yale.graph.visual.GraphPanelEditMode 29
Tag @see: reference not found: edu.yale.graph.visual.GraphPanelVertexMode 29
Tag @see: reference not found: edu.yale.graph.visual.GraphPanelViewMode 29
@return tag has no arguments. 169
@param argument "graph" is not a parameter name. 177

edu/yale/csgp/vitapad/graph/AbstractGraph.java

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@return tag has no arguments. 374

edu/yale/csgp/vitapad/graph/DataClass.java

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@return tag has no arguments. 100

edu/yale/csgp/vitapad/graph/DecorableElement.java

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Tag @see: reference not found: edu.yale.graph.DecorableElementImp 18

edu/yale/csgp/vitapad/graph/DecorableElementImp.java

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Tag @see: reference not found: edu.yale.graph.DecorableElementImp 15
Tag @see: reference not found: edu.yale.graph.Edge 15
@return tag has no arguments. 162

edu/yale/csgp/vitapad/graph/Decoration.java

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Tag @see: reference not found: edu.yale.graph.DecorationImp 22
Tag @see: reference not found: edu.yale.graph.PWEnzyme 22
Tag @see: reference not found: edu.yale.graph.Enzyme 22
Tag @see: reference not found: edu.yale.graph.visual.VisualDecoration 22

edu/yale/csgp/vitapad/graph/DecorationListener.java

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Tag @see: reference not found: edu.yale.graph.visual.VisualEdge 13

edu/yale/csgp/vitapad/graph/DummyVertex.java

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Tag @see: reference not found: edu.yale.graph.PWVertex 21
Tag @see: reference not found: edu.yale.graph.type.InvisibleVertex 21
@param argument "id" is not a parameter name. 37
@param argument "dcl" is not a parameter name. 37

edu/yale/csgp/vitapad/graph/Edge.java

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Tag @see: reference not found: edu.yale.graph.EdgeImp 23
Tag @see: reference not found: edu.yale.graph.Link 23
Tag @see: reference not found: edu.yale.graph.visual.VisualEdge 23

edu/yale/csgp/vitapad/graph/Experiment.java

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@return tag has no arguments. 69
@return tag has no arguments. 77
@return tag has no arguments. 85
@return tag has no arguments. 93
@param argument "string" is not a parameter name. 109
@param argument "b" is not a parameter name. 117

edu/yale/csgp/vitapad/graph/Graph.java

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Tag @see: reference not found: edu.yale.graph.GraphImp 24
Tag @see: reference not found: edu.yale.graph.visual.VisualGraph 24

edu/yale/csgp/vitapad/graph/GraphElement.java

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Tag @see: reference not found: edu.yale.graph.visual.VisualGraphElement 9

edu/yale/csgp/vitapad/graph/GraphEvent.java

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Tag @see: reference not found: edu.yale.graph.GraphListener 13
Tag @see: reference not found: edu.yale.graph.DecorationListener 13
@param argument "string" is not a parameter name. 110

edu/yale/csgp/vitapad/graph/GraphListener.java

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Tag @see: reference not found: edu.yale.graph.visual.VisualGraph 13

edu/yale/csgp/vitapad/graph/LabeledElement.java

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Tag @see: reference not found: edu.yale.graph.LabeledElementImp 10

edu/yale/csgp/vitapad/graph/LabeledElementImp.java

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Tag @see: reference not found: edu.yale.graph.LabeledElement 8

edu/yale/csgp/vitapad/graph/LinkableElement.java

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Tag @see: reference not found: edu.yale.graph.LinkableElementImp 12
Tag @see: can't find setEnabled(boolean enabled) in edu.yale.csgp.vitapad.graph.LinkableElement 37
Tag @see: can't find isEnabled() in edu.yale.csgp.vitapad.graph.LinkableElement 44

edu/yale/csgp/vitapad/graph/LinkableElementImp.java

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Tag @see: reference not found: edu.yale.graph.LinkableElement 8
Tag @see: can't find setEnabled(boolean enabled) in edu.yale.csgp.vitapad.graph.LinkableElementImp 46
Tag @see: can't find isEnabled() in edu.yale.csgp.vitapad.graph.LinkableElementImp 56

edu/yale/csgp/vitapad/graph/PathwayDecoration.java

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Tag @see: reference not found: edu.yale.graph.Decoration 29
Tag @see: reference not found: edu.yale.graph.PWEnzyme 29
@return tag has no arguments. 118
@return tag has no arguments. 126
@return tag has no arguments. 134
@return tag has no arguments. 142
@return tag has no arguments. 150
@return tag has no arguments. 477

edu/yale/csgp/vitapad/graph/PathwayEdge.java

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Tag @see: reference not found: edu.yale.graph.Edge 31
Tag @see: reference not found: edu.yale.graph.Link 31
@return tag has no arguments. 348
@return tag has no arguments. 356
@return tag has no arguments. 366
@param argument "edge" is not a parameter name. 366
@return tag has no arguments. 411

edu/yale/csgp/vitapad/graph/PathwayGraph.java

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Tag @see: reference not found: edu.yale.graph.Graph 23
@return tag has no arguments. 77
@param argument "pathway" is not a parameter name. 85
@param argument "exp" is not a parameter name. 265
@return tag has no arguments. 283
@return tag has no arguments. 291

edu/yale/csgp/vitapad/graph/PathwayVertex.java

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Tag @see: reference not found: edu.yale.graph.Vertex 28
Tag @see: reference not found: edu.yale.graph.PWVertex 28
@return tag has no arguments. 155
@return tag has no arguments. 163
@return tag has no arguments. 171
@return tag has no arguments. 179
@return tag has no arguments. 187
@return tag has no arguments. 220
@return tag has no arguments. 228
@param argument "i" is not a parameter name. 244
@return tag has no arguments. 462

edu/yale/csgp/vitapad/graph/TooltipElement.java

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Tag @see: reference not found: edu.yale.graph.ToolTippedElementImp 11
Tag @see: can't find setEnabled(boolean enabled) in edu.yale.csgp.vitapad.graph.TooltipElement 36
Tag @see: can't find isEnabled() in edu.yale.csgp.vitapad.graph.TooltipElement 43

edu/yale/csgp/vitapad/graph/TooltipElementImp.java

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Tag @see: reference not found: edu.yale.graph.ToolTippedElement 8
Tag @see: can't find setEnabled(boolean enabled) in edu.yale.csgp.vitapad.graph.TooltipElementImp 47
Tag @see: can't find isEnabled() in edu.yale.csgp.vitapad.graph.TooltipElementImp 57

edu/yale/csgp/vitapad/graph/VPGradient.java

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@return tag has no arguments. 132
@return tag has no arguments. 141
@return tag has no arguments. 149
@return tag has no arguments. 157
@return tag has no arguments. 165
@return tag has no arguments. 173
@return tag has no arguments. 181
@param argument "d" is not a parameter name. 197
@param argument "d" is not a parameter name. 221

edu/yale/csgp/vitapad/graph/Vertex.java

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Tag @see: reference not found: edu.yale.graph.VertexImp 20
Tag @see: reference not found: edu.yale.graph.PWVertex 20
Tag @see: reference not found: edu.yale.graph.Compound 20
Tag @see: reference not found: edu.yale.graph.visual.VisualVertex 20

edu/yale/csgp/vitapad/gui/components/AnnotationArea.java

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@return tag has no arguments. 145
@return tag has no arguments. 153
@param argument "i" is not a parameter name. 161
@param argument "i" is not a parameter name. 169

edu/yale/csgp/vitapad/gui/components/ExpandableVPRLabel.java

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@param argument "i" is not a parameter name. 54

edu/yale/csgp/vitapad/gui/components/GradientLabel.java

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@return tag has no arguments. 86
@return tag has no arguments. 94
@return tag has no arguments. 102
@return tag has no arguments. 134

edu/yale/csgp/vitapad/gui/components/TypeButton.java

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@return tag has no arguments. 281
@return tag has no arguments. 289

edu/yale/csgp/vitapad/gui/dialogs/CompoundDisplayPanel.java

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Tag @author cannot be used in field documentation. It can only be used in the following types of documentation: overview, package, class/interface. 57

edu/yale/csgp/vitapad/gui/dialogs/EditGradientDialog.java

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Tag @author cannot be used in field documentation. It can only be used in the following types of documentation: overview, package, class/interface. 163

edu/yale/csgp/vitapad/gui/dialogs/EnzymeDisplayPanel.java

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Tag @author cannot be used in field documentation. It can only be used in the following types of documentation: overview, package, class/interface. 50

edu/yale/csgp/vitapad/util/GlassPane.java

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@param argument "Container" is not a parameter name. 24

edu/yale/csgp/vitapad/util/Resources.java

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@param argument "string" is not a parameter name. 47

edu/yale/csgp/vitapad/util/geom/Geometry.java

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@return tag has no arguments. 143

edu/yale/csgp/vitapad/util/texhyphj/Hyphenator.java

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Tag @see: reference not found: net.davidashen.util.ErrorHandler 29

edu/yale/csgp/vitapad/util/texhyphj/List.java

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Tag @see: reference not found: net.davidashen.util.Applicator 325
Tag @see: reference not found: net.davidashen.util.Applicator 342

edu/yale/csgp/vitapad/visual/AbstractLabeledRenderer.java

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Tag @see: reference not found: edu.yale.graph.visual.LabeledVisualGraphElement 20
Tag @see: reference not found: edu.yale.graph.visual.VisualVertex 20
Tag @see: reference not found: edu.yale.graph.visual.VisualDecoration 20

edu/yale/csgp/vitapad/visual/AbstractRenderer.java

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Tag @see: reference not found: edu.yale.graph.visual.VisualGraphElement 29
Tag @see: reference not found: edu.yale.graph.visual.VisualVertex 29
Tag @see: reference not found: edu.yale.graph.visual.VisualDecoration 29
Tag @see: reference not found: edu.yale.graph.visual.VisualEdge 29
Tag @see: can't find setTexturePaint() in edu.yale.csgp.vitapad.visual.AbstractRenderer 129

edu/yale/csgp/vitapad/visual/EdgeRenderer.java

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@return tag has no arguments. 52
@return tag has no arguments. 60

edu/yale/csgp/vitapad/visual/LabeledRenderer.java

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Tag @see: reference not found: edu.yale.graph.visual.VisualGraphElement 18
Tag @see: reference not found: edu.yale.graph.visual.VisualVertex 18
Tag @see: reference not found: edu.yale.graph.visual.VisualDecoration 18

edu/yale/csgp/vitapad/visual/Renderer.java

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Tag @see: reference not found: edu.yale.graph.GraphElement 31
Tag @see: reference not found: edu.yale.graph.visual.LabeledVisualGraphElement 31
Tag @see: reference not found: edu.yale.graph.visual.AbstractVisualGraphElement 31
Tag @see: reference not found: edu.yale.graph.visual.VisualEdge 31
Tag @see: reference not found: edu.yale.graph.visual.VisualVertex 31
Tag @see: reference not found: edu.yale.graph.visual.VisualDecoration 31

edu/yale/csgp/vitapad/visual/VertexRenderer.java

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@return tag has no arguments. 75

edu/yale/csgp/vitapad/visual/paint/DecorationPainterFactory.java

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Tag @see: reference not found: edu.yale.graph.visual.painting.VisualDecorationPainterFactoryImp 11

edu/yale/csgp/vitapad/visual/paint/DecorationPainterFactoryImp.java

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Tag @see: reference not found: edu.yale.graph.visual.painting.VisualVertexPainterImp 11

edu/yale/csgp/vitapad/visual/paint/EdgePainter.java

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Tag @see: reference not found: edu.yale.graph.visual.painting.VisualEdgePainterImp 12

edu/yale/csgp/vitapad/visual/paint/EdgePainterFactory.java

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Tag @see: reference not found: edu.yale.graph.visual.painting.VisualEdgePainterFactoryImp 11

edu/yale/csgp/vitapad/visual/paint/EdgePainterFactoryImp.java

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Tag @see: reference not found: edu.yale.graph.visual.painting.VisualEdgePainterImp 11

edu/yale/csgp/vitapad/visual/paint/Painter.java

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Tag @see: reference not found: edu.yale.graph.visual.painting.PainterFactory 13

edu/yale/csgp/vitapad/visual/paint/PainterFactory.java

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Tag @see: reference not found: edu.yale.graph.visual.painting.Painter 10

edu/yale/csgp/vitapad/visual/paint/VertexPainter.java

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Tag @see: reference not found: edu.yale.graph.visual.painting.VisualVertexPainterImp 13

edu/yale/csgp/vitapad/visual/paint/VertexPainterFactory.java

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Tag @see: reference not found: edu.yale.graph.visual.painting.VisualVertexPainterFactoryImp 11

edu/yale/csgp/vitapad/visual/paint/VertexPainterFactoryImp.java

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Tag @see: reference not found: edu.yale.graph.visual.painting.VisualVertexPainterImp 11

edu/yale/csgp/vitapad/visual/paint/VertexPainterImp.java

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Tag @see: reference not found: edu.yale.graph.visual.painting.VisualVertexPainter 20

edu/yale/csgp/vitapad/visual/type/InvisibleVertex.java

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Tag @see: reference not found: edu.yale.graph.DummyVertex 13

edu/yale/csgp/vitapad/visual/type/Type.java

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Tag @see: reference not found: edu.yale.graph.type.TypeImp 27
Tag @see: reference not found: edu.yale.graph.type.DefaultVertexType1 27
Tag @see: reference not found: edu.yale.graph.type.DefaultVertexType2 27
Tag @see: reference not found: edu.yale.graph.type.DefaultEdgeType1 27
Tag @see: reference not found: edu.yale.graph.type.DefaultEdgeType2 27
Tag @see: reference not found: edu.yale.graph.type.DefaultDecorationType1 27
Tag @see: reference not found: edu.yale.graph.type.DefaultDecorationType2 27
Tag @see: reference not found: edu.yale.graph.type.InvisibleVertex 27
@param argument "curvature" is not a parameter name. 119
Tag @see: can't find setShortName(String shortName) in edu.yale.csgp.vitapad.visual.type.Type 222
Tag @see: can't find getShortName() in edu.yale.csgp.vitapad.visual.type.Type 356